This page contains links to the databases and supplementary files of CREST (Classification Resources for Environmental Sequence Tags). Files for each database (SilvaMod and Greengenes) are distributed as gzipped tar-files. Each default database file contains the mapping and tree-files needed for classification with the LCAClassifier or MEGAN, as well as:
To unpack the files, use e.g.:
tar xvzf silvamod.tar.gz
For more information about CREST, please see the GitHub repository.
For even older versions of SilvaMod (SSUrdb and LSUrdb) , please see Community profiling
Lanzén, A., Jřrgensen, S.L., Huson, D.H., Gorfer, M., Grindhaug, S.H., Jonassen, I., Řvreĺs, L. & Urich, T. CREST - Classification Resources for Environmental Sequence Tags PLoS ONE, Public Library of Science, 2012, Vol. 7(11), pp. e49334
Lanzen, A.; Jorgensen, S. L.; Bengtsson, M. M.; Jonassen, I.; Ovreas, L. & Urich, T. (2011), 'Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA.', FEMS Microbiol Ecol 77, 577-589.